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J Mol Graph Model ; 102: 107763, 2021 01.
Article in English | MEDLINE | ID: covidwho-974283

ABSTRACT

The molecular electronic density theory (MEDT) was invested to elucidate the chemo-, regio- and stereo-selectivity of the 1,3-dipolar cycloaddition between Diazomethane (DZM) and Psilostachyin (PSH). The DFT method at B3LYP/6-31 + G (d,p) level of theory was used. Reactivity indices, transition structures theory, IGM and ELF analysis were employed to reveal the mechanism of the reaction. The addition of DZM to PSH takes place through a one-step mechanism and an asynchronous transition states. Eight possible addition channels of reaction were investigated (addition of C (sp2) to Diazomethane at C4, C5, C6 or C7). The addition of C (sp2) at C5 leading to P1 product is the preferred channel. The addition of ether does not affect the chemo-, regio- and stereo-selectivity of the reaction. Analysis of transfer of charges along the IRC path associated with the P1 product shows a polar character for the studied reaction. We have also used the noncovalent interaction (NCI) which is very helpful to reveal the most favored addition channel of the reaction, by analyzing the weak interactions in different TSs. Finally, we investigate about the potential of inhibition of some pyrazoline compounds against COVID-19-Mpro by performing a molecular docking calculations.


Subject(s)
Antiviral Agents/chemistry , Antiviral Agents/pharmacology , Lactones/chemistry , Lactones/pharmacology , SARS-CoV-2/drug effects , SARS-CoV-2/enzymology , Sesquiterpenes/chemistry , Sesquiterpenes/pharmacology , Viral Matrix Proteins/chemistry , Viral Matrix Proteins/drug effects , COVID-19/virology , Cycloaddition Reaction , Diazomethane/chemistry , Humans , Molecular Docking Simulation , Pandemics , Protease Inhibitors/chemistry , Protease Inhibitors/pharmacology , Protein Conformation , Pyrazoles/chemistry , Pyrazoles/pharmacology , Static Electricity , COVID-19 Drug Treatment
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